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Here is where we will come to a consensus on the initial terms that will be included in our ontology of cognitive paradigms.  Our starting point are the terms associated with the [[BrainMap Taxonomy]].
 
Here is where we will come to a consensus on the initial terms that will be included in our ontology of cognitive paradigms.  Our starting point are the terms associated with the [[BrainMap Taxonomy]].
  
−
We aim to decompose each [[Condition]] into:
+
In CopPO, a cognitive [[paradigm]] is represented by the concept of [[Behavioral Experimental Paradigm]]. Each [[Behavioral Experimental Paradigm]] is characterized by one or more [[Behavioral Experimental Paradigm Condition]]s and [[Behavioral Experimental Paradigm Condition Contrast]]s.
  
−
*[[Stimulus]] (role)
+
We aim to decompose each condition into its corresponding stimulus, response, and instructions:
−
**[[Stimulus Modality]] (quality)
+
 
−
**[[Stimulus Type]] (class)
+
*[[Stimulus]]
−
**[[Stimulus Role]] (quality?)
+
**[[Stimulus Role]]
−
*[[Response]] (role)
+
**[[Implicit Stimulus]]
−
**[[Covert Response]] (class?)
+
**[[Explicit Stimulus]]
−
**[[Overt Response]] (class?)
+
***[[Stimulus Modality]]
−
***[[Response Modality]] (class)
+
*[[Response]]
−
***[[Response Type]] (class)
+
**[[Response Role]]
−
*[[Instructions]] (information-bearing entity?)
+
**[[Covert Response]]
 +
**[[Overt Response]]
 +
***[[Response Modality]]
 +
*[[Instructions]]
  
 
Each of these terms is categorized by a set of classes, which will increase in size as CogPO evolves.
 
Each of these terms is categorized by a set of classes, which will increase in size as CogPO evolves.
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{|
 
{|
 
|-
 
|-
−
|  width="200" | [[Auditory]]
+
|  width="200" | [[Auditory Modality]]
−
|  width="200" | [[Olfactory]]
+
|  width="200" | [[Interoceptive Modality]]
−
|  width="200" | [[Visual]]
+
|  width="200" | [[Tactile Modality]]
−
|-
 
−
| [[Gustatory]]||[[Tactile]]||[[No Stimulus Modality]]
 
 
|-
 
|-
−
| [[Interoceptive]]
+
| [[Gustatory Modality]]||[[Olfactory Modality]]||[[Visual Modality]]
−
|
 
 
|}
 
|}
  
−
===Stimulus Type===
+
===Explicit Stimulus===
 
{|
 
{|
 
|-
 
|-
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|  width="200" | [[Painful Stimulation]]
 
|  width="200" | [[Painful Stimulation]]
 
|-
 
|-
−
| [[Abstract Patterns]]||[[Flashing Checkerboard]]||[[Pictures]]
+
| [[Abstract Patterns]]||[[Flashing Checkerboard]]||[[Points of Light]]
 
|-
 
|-
−
| [[Acupuncture]]||[[Food]]||[[Points of Light]]
+
| [[Acupuncture]]||[[Food]]||[[Pseudowords]]
 
|-
 
|-
−
| [[Asian Characters]]||[[Fractals]]||[[Pseudowords]]
+
| [[Asian Characters]]||[[Fractals]]||[[Random Dots]]
 
|-
 
|-
−
| [[Braille Dots]]||[[Heat]]||[[Random Dots]]
+
| [[Braille Dots]]||[[Heat]]||[[Reversed Speech]]
 
|-
 
|-
−
| [[Breathable Gas]]||[[Infrared Laser]]||[[Reversed Speech]]
+
| [[Breathable Gas]]||[[Infrared Laser]]||[[Shapes]]
 
|-
 
|-
−
| [[Chord Sequences]]||[[Infusion]]||[[Shapes]]
+
| [[Chord Sequences]]||[[Infusion]]||[[Syllables]]
 
|-
 
|-
−
| [[Clicks]]||[[Letters]]||[[Syllables]]
+
| [[Clicks]]||[[Letters]]||[[Symbols]]
 
|-
 
|-
−
| [[Digits]]||[[Music]]||[[Symbols]]
+
| [[Digits]]||[[Music]]||[[TMS]]
 
|-
 
|-
−
| [[Electrical Stimulation]]||[[Noise]]||[[TMS]]
+
| [[Electrical Stimulation]]||[[Noise]]||[[Tactile Stimulation]]
 
|-
 
|-
−
| [[Eye Puffs]]||[[No Stimulation]]||[[Tactile Stimulation]]
+
| [[Eye Puffs]]||[[Nonverbal Vocal Sounds]]||[[Tones]]
 
|-
 
|-
−
| [[Faces]]||[[Nonverbal Vocal Sounds]]||[[Tones]]
+
| [[Faces]]||[[Nonvocal Sounds]]||[[Vibratory Stimulation]]
 
|-
 
|-
−
| [[False Fonts]]||[[Nonvocal Sounds]]||[[Vibratory Stimulation]]
+
| [[False Fonts]]||[[Odor]]||[[Words]]
 
|-
 
|-
−
| [[Film Clip]]||[[Odor]]||[[Words]]
+
| [[Film Clips]]||[[Pictures]]
 
|}
 
|}
  
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|}
 
|}
  
−
===Overt Response Modality===
+
===Response Modality===
 
{|
 
{|
 
|-
 
|-
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|}
 
|}
  
−
===Overt Response Type===
+
===Overt Response===
 
{| {{table}}
 
{| {{table}}
 
|-
 
|-
 
|  width="200" | [[Blink]]
 
|  width="200" | [[Blink]]
−
|  width="200" | [[Flexion-Extension]]
+
|  width="200" | [[Finger Tapping]]
 
|  width="200" | [[Saccades]]
 
|  width="200" | [[Saccades]]
 
|-
 
|-
−
| [[Breath-Hold]]||[[Grasp]]||[[Speech]]
+
| [[Breathe Response]]||[[Flexion or Extension]]||[[Smile Response]]
 +
|-
 +
| [[Breath-Hold Response]]||[[Grasp]]||[[Speech]]
 
|-
 
|-
 
| [[Button Press]]||[[Manipulate]]||[[Swallow]]
 
| [[Button Press]]||[[Manipulate]]||[[Swallow]]
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| [[Draw]]||[[Micturate]]||[[Whistle]]
 
| [[Draw]]||[[Micturate]]||[[Whistle]]
 
|-
 
|-
−
| [[Drink]]||[[Point]]||[[Write]]
+
| [[Drink]]||[[Point]]|||[[Write]]
−
|-
 
−
| [[Finger Tapping]]||[[Smile]]
 
 
|}
 
|}
  
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|-
 
|-
 
|  width="200" | [[Attend]]
 
|  width="200" | [[Attend]]
−
|  width="200" | [[Generate]]
+
|  width="200" | [[Fixate]]
−
|  width="200" | [[Repeat]]
+
|  width="200" | [[Recall]]
 +
|-
 +
| [[Breathe Instructions]]||[[Generate]]||[[Repeat]]
 
|-
 
|-
−
| [[Count]]||[[Imagine]]||[[Rest]]
+
| [[Breath-Hold Instructions]]||[[Imagine]]||[[Rest]]
 
|-
 
|-
−
| [[Detect]]||[[Move]]||[[Sing]]
+
| [[Count]]||[[Move]]||[[Sing]]
 
|-
 
|-
−
| [[Discriminate]]||[[Name]]||[[Track]]
+
| [[Detect]]||[[Name]]||[[Smile Instructions]]
 
|-
 
|-
−
| [[Encode]]||[[Read]]||
+
| [[Discriminate]]||[[Read]]||[[Track]]
 
|-
 
|-
−
| [[Fixate]]||[[Recall]]||
+
| [[Encode]]
 +
|}
 +
 
 +
===Paradigm Classes===
 +
Currently, CogPO has defined 84 classes of paradigms:
 +
 
 +
#[[Action Observation Paradigm]]
 +
#[[Acupuncture Paradigm]]
 +
#[[Anti-Saccades Paradigm]]
 +
#[[Braille Reading Paradigm]]
 +
#[[Breath-Holding Paradigm]]
 +
#[[Chewing or Swallowing Paradigm]]
 +
#[[Classical Conditioning Paradigm]]
 +
#[[Counting or Calculation Paradigm]]
 +
#[[Cued Explicit Recognition Paradigm]]
 +
#[[Deception Task Paradigm]]
 +
#[[Deductive Reasoning Paradigm]]
 +
#[[Delay Discounting Task Paradigm]]
 +
#[[Delayed Match To Sample Paradigm]]
 +
#[[Delayed Non Match To Sample Paradigm]]
 +
#[[Divided Auditory Attention Paradigm]]
 +
#[[Drawing Paradigm]]
 +
#[[Eating or Drinking Paradigm]]
 +
#[[Encoding Paradigm]]
 +
#[[Episodic Recall Paradigm]]
 +
#[[Face Monitor or Discrimination Paradigm]]
 +
#[[Film Viewing Paradigm]]
 +
#[[Finger Tapping Paradigm]]
 +
#[[Fixation Paradigm]]
 +
#[[Flanker Task Paradigm]]
 +
#[[Flashing Checkerboard Paradigm]]
 +
#[[Flexion or Extension Paradigm]]
 +
#[[Free Word List Recall Paradigm]]
 +
#[[Go/No-Go Paradigm]]
 +
#[[Grasping Paradigm]]
 +
#[[Imagined Movement Paradigm]]
 +
#[[Imagined Objects or Scenes Paradigm]]
 +
#[[Isometric Force Paradigm]]
 +
#[[Mental Rotation Paradigm]]
 +
#[[Micturition Task Paradigm]]
 +
#[[Music Comprehension or Production Paradigm]]
 +
#[[n-back Paradigm]]
 +
#[[Naming (Covert) Paradigm]]
 +
#[[Naming (Overt) Paradigm]]
 +
#[[Non-Painful Electrical Stimulation Paradigm]]
 +
#[[Non-Painful Thermal Stimulation Paradigm]]
 +
#[[Oddball Discrimination Paradigm]]
 +
#[[Olfactory Monitor or Discrimination Paradigm]]
 +
#[[Orthographic Discrimination Paradigm]]
 +
#[[Pain Monitor or Discrimination Paradigm]]
 +
#[[Paired Associate Recall Paradigm]]
 +
#[[Passive Listening Paradigm]]
 +
#[[Passive Viewing Paradigm]]
 +
#[[Phonological Discrimination Paradigm]]
 +
#[[Pitch Monitor or Discrimination Paradigm]]
 +
#[[Pointing Paradigm]]
 +
#[[Posner Task Paradigm]]
 +
#[[Reading (Covert) Paradigm]]
 +
#[[Reading (Overt) Paradigm]]
 +
#[[Recitation or Repetition (Covert) Paradigm]]
 +
#[[Recitation or Repetition (Overt) Paradigm]]
 +
#[[Rest Paradigm]]
 +
#[[Reward Task Paradigm]]
 +
#[[Saccades Paradigm]]
 +
#[[Semantic Monitor or Discrimination Paradigm]]
 +
#[[Sequence Recall or Learning Paradigm]]
 +
#[[Simon Task Paradigm]]
 +
#[[Sleep Paradigm]]
 +
#[[Spatial or Location Discrimination Paradigm]]
 +
#[[Sternberg Task Paradigm]]
 +
#[[Stroop Task Paradigm]]
 +
#[[Subjective Emotional Picture Discrimination Paradigm]]
 +
#[[Syntactic Discrimination Paradigm]]
 +
#[[Tactile Monitor or Discrimination Paradigm]]
 +
#[[Task Switching Paradigm]]
 +
#[[Theory of Mind Task Paradigm]]
 +
#[[Tone Monitor or Discrimination Paradigm]]
 +
#[[Tower of London Paradigm]]
 +
#[[Transcranial Magnetic Stimulation Paradigm]]
 +
#[[Vibrotactile Monitor or Discrimination Paradigm]]
 +
#[[Video Games Paradigm]]
 +
#[[Visual Distractor or Visual Attention Paradigm]]
 +
#[[Visual Pursuit or Tracking Paradigm]]
 +
#[[Whistling Paradigm]]
 +
#[[Wisconsin Card Sorting Test Paradigm]]
 +
#[[Word Generation (Covert) Paradigm]]
 +
#[[Word Generation (Overt) Paradigm]]
 +
#[[Word Stem Completion (Covert) Paradigm]]
 +
#[[Word Stem Completion (Overt) Paradigm]]
 +
#[[Writing Paradigm]]
 +
 
 +
===CogPO Relationships===
 +
Proper curation of the above concepts required creation of a set of novel relationships:
 +
{|
 +
|-
 +
|  width="200" | [[has_stimulus]]
 +
|  width="200" | [[has_response]]
 +
|  width="200" | [[has_instructions]]
 +
|-
 +
| [[has_stimulus_modality]]||[[has_response_modality]]||[[has_contrast]]
 +
|-
 +
| [[included_in_contrast]]||[[includes_condition]]||[[related_to]]
 
|}
 
|}
  
 
===Basic Formal Ontology===
 
===Basic Formal Ontology===
−
CogPO uses a number of terms from BFO:
+
CogPO uses a number of terms from Basic Formal Ontology ([http://www.ifomis.org/bfo/ BFO]), Ontology for Biomedical Investigations ([http://obi-ontology.org/page/Main_Page OBI]), and the Information Artifact Ontology ([http://code.google.com/p/information-artifact-ontology/ IAO]):
 
{|
 
{|
 
|-
 
|-
−
|  width="200" | [[continuant]]
+
|  width="200" | [[action specification]]
−
|  width="200" | [[occurrent]]
+
|  width="200" | [[fiat object part]]
−
|  width="200" | [[processual entity]]
+
|  width="200" | [[object aggregate]]
 +
|-
 +
| [[planned process]]||[[process aggregate]]||[[quality]]
 
|-
 
|-
−
| [[quality]]||[[role]]
+
| [[role]]
 
|}
 
|}
  
 
===For More Information===
 
===For More Information===
 
Please see the [[Aims of the CogPO Project]] or [[CogPO's Wiki Policies]].
 
Please see the [[Aims of the CogPO Project]] or [[CogPO's Wiki Policies]].

Latest revision as of 12:02, 22 July 2015

Welcome to the CogPO Wiki!

Here is where we will come to a consensus on the initial terms that will be included in our ontology of cognitive paradigms. Our starting point are the terms associated with the BrainMap Taxonomy.

In CopPO, a cognitive paradigm is represented by the concept of Behavioral Experimental Paradigm. Each Behavioral Experimental Paradigm is characterized by one or more Behavioral Experimental Paradigm Conditions and Behavioral Experimental Paradigm Condition Contrasts.

We aim to decompose each condition into its corresponding stimulus, response, and instructions:

Each of these terms is categorized by a set of classes, which will increase in size as CogPO evolves.

Stimulus Modality

Auditory Modality Interoceptive Modality Tactile Modality
Gustatory Modality Olfactory Modality Visual Modality

Explicit Stimulus

3D Objects Fixation Point Painful Stimulation
Abstract Patterns Flashing Checkerboard Points of Light
Acupuncture Food Pseudowords
Asian Characters Fractals Random Dots
Braille Dots Heat Reversed Speech
Breathable Gas Infrared Laser Shapes
Chord Sequences Infusion Syllables
Clicks Letters Symbols
Digits Music TMS
Electrical Stimulation Noise Tactile Stimulation
Eye Puffs Nonverbal Vocal Sounds Tones
Faces Nonvocal Sounds Vibratory Stimulation
False Fonts Odor Words
Film Clips Pictures

Stimulus Role

Feedback Non-Target Reward
Target

Response Modality

Arm Hand Pelvis
Eye Leg Shoulder
Face Mouth Torso
Foot

Overt Response

Blink Finger Tapping Saccades
Breathe Response Flexion or Extension Smile Response
Breath-Hold Response Grasp Speech
Button Press Manipulate Swallow
Draw Micturate Whistle
Drink Point Write

Instructions

Attend Fixate Recall
Breathe Instructions Generate Repeat
Breath-Hold Instructions Imagine Rest
Count Move Sing
Detect Name Smile Instructions
Discriminate Read Track
Encode

Paradigm Classes

Currently, CogPO has defined 84 classes of paradigms:

  1. Action Observation Paradigm
  2. Acupuncture Paradigm
  3. Anti-Saccades Paradigm
  4. Braille Reading Paradigm
  5. Breath-Holding Paradigm
  6. Chewing or Swallowing Paradigm
  7. Classical Conditioning Paradigm
  8. Counting or Calculation Paradigm
  9. Cued Explicit Recognition Paradigm
  10. Deception Task Paradigm
  11. Deductive Reasoning Paradigm
  12. Delay Discounting Task Paradigm
  13. Delayed Match To Sample Paradigm
  14. Delayed Non Match To Sample Paradigm
  15. Divided Auditory Attention Paradigm
  16. Drawing Paradigm
  17. Eating or Drinking Paradigm
  18. Encoding Paradigm
  19. Episodic Recall Paradigm
  20. Face Monitor or Discrimination Paradigm
  21. Film Viewing Paradigm
  22. Finger Tapping Paradigm
  23. Fixation Paradigm
  24. Flanker Task Paradigm
  25. Flashing Checkerboard Paradigm
  26. Flexion or Extension Paradigm
  27. Free Word List Recall Paradigm
  28. Go/No-Go Paradigm
  29. Grasping Paradigm
  30. Imagined Movement Paradigm
  31. Imagined Objects or Scenes Paradigm
  32. Isometric Force Paradigm
  33. Mental Rotation Paradigm
  34. Micturition Task Paradigm
  35. Music Comprehension or Production Paradigm
  36. n-back Paradigm
  37. Naming (Covert) Paradigm
  38. Naming (Overt) Paradigm
  39. Non-Painful Electrical Stimulation Paradigm
  40. Non-Painful Thermal Stimulation Paradigm
  41. Oddball Discrimination Paradigm
  42. Olfactory Monitor or Discrimination Paradigm
  43. Orthographic Discrimination Paradigm
  44. Pain Monitor or Discrimination Paradigm
  45. Paired Associate Recall Paradigm
  46. Passive Listening Paradigm
  47. Passive Viewing Paradigm
  48. Phonological Discrimination Paradigm
  49. Pitch Monitor or Discrimination Paradigm
  50. Pointing Paradigm
  51. Posner Task Paradigm
  52. Reading (Covert) Paradigm
  53. Reading (Overt) Paradigm
  54. Recitation or Repetition (Covert) Paradigm
  55. Recitation or Repetition (Overt) Paradigm
  56. Rest Paradigm
  57. Reward Task Paradigm
  58. Saccades Paradigm
  59. Semantic Monitor or Discrimination Paradigm
  60. Sequence Recall or Learning Paradigm
  61. Simon Task Paradigm
  62. Sleep Paradigm
  63. Spatial or Location Discrimination Paradigm
  64. Sternberg Task Paradigm
  65. Stroop Task Paradigm
  66. Subjective Emotional Picture Discrimination Paradigm
  67. Syntactic Discrimination Paradigm
  68. Tactile Monitor or Discrimination Paradigm
  69. Task Switching Paradigm
  70. Theory of Mind Task Paradigm
  71. Tone Monitor or Discrimination Paradigm
  72. Tower of London Paradigm
  73. Transcranial Magnetic Stimulation Paradigm
  74. Vibrotactile Monitor or Discrimination Paradigm
  75. Video Games Paradigm
  76. Visual Distractor or Visual Attention Paradigm
  77. Visual Pursuit or Tracking Paradigm
  78. Whistling Paradigm
  79. Wisconsin Card Sorting Test Paradigm
  80. Word Generation (Covert) Paradigm
  81. Word Generation (Overt) Paradigm
  82. Word Stem Completion (Covert) Paradigm
  83. Word Stem Completion (Overt) Paradigm
  84. Writing Paradigm

CogPO Relationships

Proper curation of the above concepts required creation of a set of novel relationships:

has_stimulus has_response has_instructions
has_stimulus_modality has_response_modality has_contrast
included_in_contrast includes_condition related_to

Basic Formal Ontology

CogPO uses a number of terms from Basic Formal Ontology (BFO), Ontology for Biomedical Investigations (OBI), and the Information Artifact Ontology (IAO):

action specification fiat object part object aggregate
planned process process aggregate quality
role

For More Information

Please see the Aims of the CogPO Project or CogPO's Wiki Policies.

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